Liste des publications par année

2021

  • Gruel G, Diouf MB, Abadie C, Chilin-Charles Y, Etter EMC, Geffroy M, Herrmann Storck C, Meyer DF, Pagès N, Pressat G, Teycheney PY, Umber M, Vega-Rúa A, Pradel J. Critical Evaluation of Cross-Sectoral Collaborations to Inform the Implementation of the « One Health » Approach in Guadeloupe. Front Public Health. 2021 Aug 2;9:652079. doi: 10.3389/fpubh.2021.652079. PMID: 34409004; PMCID: PMC8366749.
  • Pot M, Reynaud Y, Couvin D, Ducat C, Ferdinand S, Gravey F, Gruel G, Guérin F, Malpote E, Breurec S, Talarmin A, Guyomard-Rabenirina S. Wide Distribution and Specific Resistance Pattern to Third-Generation Cephalosporins of Enterobacter cloacae Complex Members in Humans and in the Environment in Guadeloupe (French West Indies). Front Microbiol. 2021 Jun 25;12:628058. doi: 10.3389/fmicb.2021.628058. PMID: 34248862; PMCID: PMC8268024.
  • Pot M, Ducat C, Reynaud Y, Couvin D, Ferdinand S, Breurec S, Talarmin A, Guyomard-Rabenirina S. Draft Genome Sequence of Enterobacter oligotrophicus,Isolated from the Microbiome of a Lizard in the Caribbean. Microbiol Resour Announc. 2021 Sep 2;10(35):e0060221. doi: 10.1128/MRA.00602-21. Epub 2021 Sep 2. PMID: 34472977; PMCID: PMC8411919.
  • Tuffier S, Upegui E, Raghoumandan C, Viel JF; BrumiSaTerre research group. Retrospective assessment of pregnancy exposure to particulate matter from desert dust on a Caribbean island: could satellite-based aerosol optical thickness be used as an alternative to ground PM10 concentration? Environ Sci Pollut Res Int. 2021 Apr;28(14):17675-17683. doi: 10.1007/s11356-020-12204-x. Epub 2021 Jan 5. PMID: 33403634.
  • Gruel G, Sellin A, Riveiro H, Pot M, Breurec S, Guyomard-Rabenirina S, Talarmin A, Ferdinand S. Antimicrobial use and resistance in Escherichia coli from healthy food-producing animals in Guadeloupe. BMC Vet Res. 2021 Mar 8;17(1):116. doi: 10.1186/s12917-021-02810-3. PMID: 33685450; PMCID: PMC7938459.
  • Pot M, Guyomard-Rabenirina S, Couvin D, Ducat C, Enouf V, Ferdinand S, Gruel G, Malpote E, Talarmin A, Breurec S, Reynaud Y. Dissemination of Extended- Spectrum-β-Lactamase-Producing Enterobacter cloacae Complex from a Hospital to the Nearby Environment in Guadeloupe (French West Indies): ST114 Lineage Coding for a Successful IncHI2/ST1 Plasmid. Antimicrob Agents Chemother. 2021 Feb 17;65(3):e02146-20. doi: 10.1128/AAC.02146-20. PMID: 33361294; PMCID: PMC8092524.
  • Marín AV, Rastogi N, Couvin D, Mape V, Murcia MI. First approach to the population structure of Mycobacterium tuberculosis complex in the indigenous population in Puerto Nariño-Amazonas, Colombia. PLoS One. 2021 Jan 7;16(1):e0245084. doi: 10.1371/journal.pone.0245084. PMID: 33411781; PMCID: PMC7790298.

2020

  • Guyomard-Rabenirina S, Reynaud Y, Pot M, Albina E, Couvin D, Ducat C, Gruel G, Ferdinand S, Legreneur P, Le Hello S, Malpote E, Sadikalay S, Talarmin A, Breurec S. Antimicrobial Resistance in Wildlife in Guadeloupe (French West Indies): Distribution of a Single blaCTX-M-1/IncI1/ST3 Plasmid Among Humans and Wild Animals. Front Microbiol. 2020 Jul 10;11:1524. doi: 10.3389/fmicb.2020.01524. PMID: 32754130; PMCID: PMC7366356.
  • Reynaud Y, Ducat C, Talarmin A, Marcelino I. Cartography of Free-Living Amoebae in Soil in Guadeloupe (French West Indies) Using DNA Metabarcoding. Pathogens. 2020 Jun 4;9(6):440. doi: 10.3390/pathogens9060440. PMID: 32512696; PMCID: PMC7350318.
  • Moussa M, Marcelino I, Richard V, Guerlotté J, Talarmin A. An Optimized Most Probable Number (MPN) Method to Assess the Number of Thermophilic Free-Living Amoebae (FLA) in Water Samples. Pathogens. 2020 May 24;9(5):409. doi: 10.3390/pathogens9050409. PMID: 32456327; PMCID: PMC7281388.
  • Rodríguez-Castillo JG, Llerena C, Argoty-Chamorro L, Guerra J, Couvin D, Rastogi N, Murcia MI. Population structure of multidrug-resistant Mycobacterium tuberculosis clinical isolates in Colombia. Tuberculosis (Edinb). 2020 Dec;125:102011. doi: 10.1016/j.tube.2020.102011. Epub 2020 Oct 17. PMID: 33137696.
  • Couvin D, Segretier W, Stattner E, Rastogi N. Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families. Database (Oxford). 2020 Dec 15;2020:baaa108. doi: 10.1093/database/baaa108. PMID: 33320180; PMCID: PMC7737520
  • Liang PK, Zheng C, Xu XF, Zhao ZZ, Zhao CS, Li CH, Couvin D, Reynaud Y, Zozio T, Rastogi N, Sun Q. Local adaptive evolution of two distinct clades of Beijing and T families of Mycobacterium tuberculosis in Chongqing: a Bayesian population structure and phylogenetic study. Infect Dis Poverty. 2020 Jun 1;9(1):59. doi: 10.1186/s40249-020-00674-7. PMID: 32487156; PMCID: PMC7268252.
  • Melot B, Bastian S, Dournon N, Valade E, Gorgé O, Le Fleche A, Idier C, Vernier M, Fernandes E, Hoen B, Breurec S, Carles M. Three New Cases of Melioidosis, Guadeloupe, French West Indies. Emerg Infect Dis. 2020 Mar;26(3):617-619. doi: 10.3201/eid2603.190718. PMID: 32091384
  • Tafaj S, Mokrousov I, Borroni E, Trovato A, Kapisyzi P, Bardhi D, Hafizi H, Bala S, Bulo A, Bino S, Rastogi N, Cirillo D. Peculiar features of the Mycobacterium tuberculosis population structure in Albania. Infect Genet Evol. 2020 Mar;78:104136. doi: 10.1016/j.meegid.2019.104136. PMID: 31830600
  • Pezzi L, Diallo M, Rosa-Freitas MG, Vega-Rua A, Ng LFP, Boyer S, Drexler JF, Vasilakis N, Lourenco-de-Oliveira R, Weaver SC, Kohl A, de Lamballerie X, Failloux AB; GloPID-R chikungunya, o’nyong-nyong and Mayaro virus Working Group. GloPID-R report on chikungunya, o’nyong-nyong and Mayaro virus, part 5: Entomological aspects. Antiviral Res. 2020 Feb;174:104670. doi: 10.1016/j.antiviral.2019.104670. PMID: 31812638
  • Pourcel C, Touchon M, Villeriot N, Vernadet JP, Couvin D, Toffano-Nioche C, Vergnaud G. CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers. Nucleic Acids Res. 2020 Jan 8;48(D1):D535-D544. doi: 10.1093/nar/gkz915. PMID: 31624845
  • Beltrán-León M, Rodríguez-Castillo JG, Zozio T, Rastogi N, I Murcia M. Genetic diversity of Mycobacterium tuberculosis clinical isolates from HIV-TB patients from two public hospitals at Bogotá, Colombia. Infect Genet Evol. 2020 Jan;77:104059. doi: 10.1016/j.meegid.2019.104059. PMID: 31678647

2019

  • Pezzi L, Rodriguez-Morales AJ, Reusken CB, Ribeiro GS, LaBeaud AD, Lourenço-de-Oliveira R, Brasil P, Lecuit M, Failloux AB, Gallian P, Jaenisch T, Simon F, Siqueira AM, Rosa-Freitas MG, Vega Rua A, Weaver SC, Drexler JF, Vasilakis N, de Lamballerie X; GloPID-R chikungunya, o’nyong-nyong and Mayaro virus Working Group. GloPID-R report on chikungunya, o’nyong-nyong and Mayaro virus, part 3: Epidemiological distribution of Mayaro virus. Antiviral Res. 2019 Dec;172:104610. doi: 10.1016/j.antiviral.2019.104610. PMID: 31545981
  • Breurec S, Reynaud Y, Frank T, Farra A, Costilhes G, Weill FX, Le Hello S. Serotype distribution and antimicrobial resistance of human Salmonella enterica in Bangui, Central African Republic, from 2004 to 2013. PLoS Negl Trop Dis. 2019 Dec 2;13(12):e0007917. doi: 10.1371/journal.pntd.0007917. PMID: 31790418
  • Pezzi L, LaBeaud AD, Reusken CB, Drexler JF, Vasilakis N, Diallo M, Simon F, Jaenisch T, Gallian P, Sall A, Failloux AB, Weaver SC, de Lamballerie X; GloPID-R chikungunya, o’nyong-nyong and Mayaro virus Working Group. GloPID-R report on chikungunya, o’nyong-nyong and Mayaro virus, part 2: Epidemiological distribution of o’nyong-nyong virus. Antiviral Res. 2019 Dec;172:104611. doi: 10.1016/j.antiviral.2019.104611. PMID: 31545982
  • Habouria H, Pokharel P, Maris S, Garénaux A, Bessaiah H, Houle S, Veyrier FJ, Guyomard-Rabenirina S, Talarmin A, Dozois CM. Three new serine-protease autotransporters of Enterobacteriaceae (SPATEs) from extra-intestinal pathogenic Escherichia coli and combined role of SPATEs for cytotoxicity and colonization of the mouse kidney. Virulence. 2019 Dec;10(1):568-587. doi: 10.1080/21505594.2019.1624102. PMID: 31198092
  • Moutailler S, Yousfi L, Mousson L, Devillers E, Vazeille M, Vega-Rúa A, Perrin Y, Jourdain F, Chandre F, Cannet A, Chantilly S, Restrepo J, Guidez A, Dusfour I, Vieira Santos de Abreu F, Pereira Dos Santos T, Jiolle D, Visser TM, Koenraadt CJM, Wongsokarijo M, Diallo M, Diallo D, Gaye A, Boyer S, Duong V, Piorkowski G, Paupy C, Lourenco de Oliveira R, de Lamballerie X, Failloux AB. A New High-Throughput Tool to Screen Mosquito-Borne Viruses in Zika Virus Endemic/Epidemic Areas. Viruses. 2019 Sep 27;11(10). pii: E904. doi: 10.3390/v11100904. PMID: 31569736
  • Shi C, Beller L, Deboutte W, Yinda KC, Delang L, Vega-Rúa A, Failloux AB, Matthijnssens J. Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics. Microbiome. 2019 Aug 28;7(1):121. doi: 10.1186/s40168-019-0734-2. PMID: 31462331
  • Boullis A, Cordel N, Herrmann-Storck C, Vega-Rúa A. Experimental Assessment of Zika Virus Mechanical Transmission by Aedes Aegypti. Viruses. 2019 Jul 31;11(8). pii: E695. doi: 10.3390/v11080695. PMID: 31370135
  • Guyomard-Rabenirina S, Weill FX, Le Hello S, Bastian S, Berger F, Ferdinand S, Legreneur P, Loraux C, Malpote E, Muanza B, Richard V, Talarmin A, Breurec S. Reptiles in Guadeloupe (French West Indies) are a reservoir of major human Salmonella enterica serovars. PLoS One. 2019 Jul 19;14(7):e0220145. doi: 10.1371/journal.pone.0220145. PMID: 31323053
  • Perdigão J, Silva C, Diniz J, Pereira C, Machado D, Ramos J, Silva H, Abilleira F, Brum C, Reis AJ, Macedo M, Scaini JL, Silva AB, Esteves L, Macedo R, Maltez F, Clemente S, Coelho E, Viegas S, Rabna P, Rodrigues A, Taveira N, Jordao L, Kritski A, Lapa E Silva JR, Mokrousov I, Couvin D, Rastogi N, Couto I, Pain A, McNerney R, Clark TG, von Groll A, Dalla-Costa ER, Rossetti ML, Silva PEA, Viveiros M, Portugal I. Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries. Infect Genet Evol. 2019 Aug;72:44-58. doi: 10.1016/j.meegid.2018.03.011. PMID: 29559379
  • Couvin D, David A, Zozio T, Rastogi N. Macro-geographical specificities of the prevailing tuberculosis epidemic as seen through SITVIT2, an updated version of the Mycobacterium tuberculosis genotyping database. Infect Genet Evol. 2019 Aug;72:31-43. doi: 10.1016/j.meegid.2018.12.030. PMID: 30593925
  • Pereira C, Gomes P, Taveira R, Silva C, Maltez F, Macedo R, Costa C, Couvin D, Rastogi N, Viveiros M, Perdigão J, Portugal I. Insights on the Mycobacterium tuberculosis population structure associated with migrants from Portuguese-speaking countries over a three-year period in Greater Lisbon, Portugal: Implications at the public health level. Infect Genet Evol. 2019 Jul;71:159-165. doi: 10.1016/j.meegid.2019.03.025. PMID: 30928606
  • Couvin D, Reynaud Y, Rastogi N. Two tales: Worldwide distribution of Central Asian (CAS) versus ancestral East-African Indian (EAI) lineages of Mycobacterium tuberculosis underlines a remarkable cleavage for phylogeographical, epidemiological and demographical characteristics. PLoS One. 2019 Jul 12;14(7):e0219706. doi: 10.1371/journal.pone.0219706. PMID: 31299060
  • Pezzi L, Reusken CB, Weaver SC, Drexler JF, Busch M, LaBeaud AD, Diamond MS, Vasilakis N, Drebot MA, Siqueira AM, Ribeiro GS, Kohl A, Lecuit M, Ng LFP, Gallian P, de Lamballerie X; GloPID-R Chikungunya, O’nyong-nyong and Mayaro virus Working Group. GloPID-R report on Chikungunya, O’nyong-nyong and Mayaro virus, part I: Biological diagnostics. Antiviral Res. 2019 Jun;166:66-81. doi: 10.1016/j.antiviral.2019.03.009. PMID: 30905821
  • Wang F, Delannay C, Goindin D, Deng L, Guan S, Lu X, Fouque F, Vega-Rúa A, Picimbon JF. Cartography of odor chemicals in the dengue vector mosquito (Aedes aegypti L., Diptera/Culicidae). Sci Rep. 2019 Jun 11;9(1):8510. doi: 10.1038/s41598-019-44851-7. PMID: 31186462
  • Bonneault M, Andrianoelina VH, Herindrainy P, Rabenandrasana MAN, Garin B, Breurec S, Delarocque-Astagneau E, Guillemot D, Andrianirina ZZ, Collard JM, Huynh BT, Opatowski L. Transmission Routes of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae in a Neonatology Ward in Madagascar. Am J Trop Med Hyg. 2019 Jun;100(6):1355-1362. doi: 10.4269/ajtmh.18-0410. PMID: 31017082
  • Lannuzel A, Fergé JL, Lobjois Q, Signate A, Rozé B, Tressières B, Madec Y, Poullain P, Herrmann C, Najioullah F, McGovern E, Savidan AC, Valentino R, Breurec S, Césaire R, Hirsch E, Lledo PM, Thiery G, Cabié A, Lazarini F, Roze E. Long-term outcome in neuroZika: When biological diagnosis matters. Neurology. 2019 May 21;92(21):e2406-e2420. doi: 10.1212/WNL.0000000000007536. PMID: 31028126
  • Hery L, Boullis A, Delannay C, Vega-Rúa A. Transmission potential of African, Asian and American Zika virus strains by Aedes aegypti and Culex quinquefasciatus from Guadeloupe (French West Indies). Emerg Microbes Infect. 2019;8(1):699-706. doi: 10.1080/22221751.2019.1615849. PMID: 31109248
  • Gutiérrez-Bugallo G, Piedra LA, Rodriguez M, Bisset JA, Lourenço-de-Oliveira R, Weaver SC, Vasilakis N, Vega-Rúa A. Vector-borne transmission and evolution of Zika virus. Nat Ecol Evol. 2019 Apr;3(4):561-569. doi: 10.1038/s41559-019-0836-z. PMID: 30886369
  • Marcelino I, Colomé-Calls N, Holzmuller P, Lisacek F, Reynaud Y, Canals F, Vachiéry N. Sweet and Sour Ehrlichia: Glycoproteomics and Phosphoproteomics Reveal New Players in Ehrlichia ruminantium Physiology and Pathogenesis. Front Microbiol. 2019 Mar 15;10:450. doi: 10.3389/fmicb.2019.00450. PMID: 30930869